RedeR

Interactive visualization and manipulation of nested networks

Bioconductor version: 2.13

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations. It implements a callback engine by using a low-level R-to-Java interface to build and run common plugins. In this sense, RedeR takes advantage of R to run robust statistics, while the R-to-Java interface bridges the gap between network analysis and visualization.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RedeR")

To cite this package in a publication, start R and enter:

    citation("RedeR")

Documentation

PDF fig1.pdf
PDF fig2.pdf
PDF fig3.pdf
PDF fig4.pdf
PDF fig5a.pdf
PDF fig5b.pdf
PDF fig5c.pdf
PDF R Script Main vignette: interactive visualization and manipulation of nested networks
PDF   Reference Manual
Text   NEWS

Details

biocViews GraphsAndNetworks, NetworkVisualization, Networks, Software, Visualization
Version 1.10.1
In Bioconductor since BioC 2.9 (R-2.14)
License GPL (>= 2)
Depends R (>= 2.15), methods, igraph
Imports RCurl, XML, XMLRPC, rJava
Suggests PANR, pvclust
System Requirements
URL http://genomebiology.com/2012/13/4/R29
Depends On Me Fletcher2013b
Imports Me Mulder2012, RTN
Suggests Me PANR

Package Downloads

Package Source RedeR_1.10.1.tar.gz
Windows Binary RedeR_1.10.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RedeR_1.10.1.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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