PSCBS: Analysis of Parent-Specific DNA Copy Numbers

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.

Version: 0.45.1
Depends: R (≥ 3.1.1), utils
Imports: R.methodsS3 (≥ 1.7.0), R.oo (≥ 1.19.0), R.utils (≥ 2.1.0), R.cache (≥ 0.10.0), matrixStats (≥ 0.14.2), DNAcopy (≥ 1.40.0)
Suggests: Hmisc (≥ 3.16-0), R.rsp (≥ 0.20.0), R.devices (≥ 2.13.0), ggplot2 (≥ 1.0.1), aroma.light (≥ 2.2.1)
Published: 2015-09-17
Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut], Venkatraman E. Seshan [aut], Adam B. Olshen [aut], Paul T. Spellman [aut], Richard A. Olshen [aut]
Maintainer: Henrik Bengtsson <henrikb at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: PSCBS citation info
Materials: NEWS
CRAN checks: PSCBS results


Reference manual: PSCBS.pdf
Vignettes: Total copy-number segmentation using CBS
Parent-specific copy-number segmentation using Paired PSCBS
Package source: PSCBS_0.45.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X Snow Leopard binaries: r-release: not available, r-oldrel: PSCBS_0.44.0.tgz
OS X Mavericks binaries: r-release: PSCBS_0.45.1.tgz
Old sources: PSCBS archive

Reverse dependencies:

Reverse imports:, aroma.core